Genome-wide mapping and identification of new quantitative trait loci affecting meat production, meat quality, and carcass traits within a Duroc purebred population

Posted in: Meat Quality, Production by admin on August 4, 2011 | No Comments

Most QTL detection studies in pigs have been carried out in experimental F2 populations. However, segregation of a QTL must be confirmed within a purebred population for successful implementation of marker-assisted selection. Previously, QTL for meat quality and carcass traits were detected on SSC 7 in a Duroc purebred population. The objectives of the present study were to carry out a whole-genome QTL analysis (except for SSC 7) for meat production, meat quality, and carcass traits and to confirm the presence of segregating QTL in a Duroc purebred population. One thousand and four Duroc pigs were studied from base to seventh generation; the pigs comprised 1 closed population of a complex multigenerational pedigree such that all individuals were related. The pigs were evaluated for 6 growth traits, 7 body size traits, 8 carcass traits, 2 physiological traits, and 11 meat quality traits, and the number of pigs with phenotypes ranged from 421 to 953. A total of 119 markers were genotyped and then used for QTL analysis. We utilized a pedigree based, multipoint variance components approach to test for linkage between QTL and the phenotypic values using a maximum likelihood method; the logarithm of odds score and QTL genotypic heritability were estimated. A total of 42 QTL with suggestive linkages and 3 QTL with significant linkages for 26 traits were detected. These included selection traits such as daily BW gain, backfat thickness, loin eye muscle area, and intramuscular fat content as well as correlated traits such as body size and meat quality traits. The present study disclosed QTL affecting growth, body size, and carcass, physiological, and meat quality traits in a Duroc purebred population.

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Head-only followed by cardiac arrest electrical stunning is an effective alternative to head-only electrical stunning in pigs

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Many small slaughter facilities use head-only electrical stunning to render swine unconscious and insensible to pain before slaughter. Head only electrical stunning is a reversible procedure that is optimally effective for approximately 15 s after stun completion. In many small North American slaughter plants, the authors have observed hoist speeds that are too slow to achieve a short enough stun-to-bleed interval to maintain insensibility through exsanguination. Unlike many European plants, there is no separate high speed hoist for pigs and exsanguination on the floor is not condoned. As a result, a 2-stage stunning method was proposed where head-only stunning for 3 s was immediately followed by application of the same stunning wand to the cardiac region of the animal for 3 s while lying in lateral recumbancy. A paired-comparison study was conducted on 89 pigs in a small slaughter facility to compare the head-only method applied for 6 s with the head/heart method. The objective was to evaluate signs of return to sensibility, stun-to-bleed time, blood lactate concentration, muscle pH, drip loss, and fresh meat color to validate the head/heart electrical stunning method for small slaughter plants. Incidence of corneal reflex was not different between head/heart (93.8%) and head only (85%) stunning. Nose twitching was more common in head only (26.5%) than head/heart (5%) stunning. Head/ heart stunning eliminated rhythmic breathing, natural blinking, eye tracking to moving objects, and righting reflex, which were all observed in head-only stunned pigs. Eye tracking to moving objects was observed in 40.8% of head-only stunned pigs. Blood lactate was not different between stunning methods (head only: 8.8mmol/L, head/heart: 7.8mmol/L). Stun-to-bleed time did not differ (head only: 32s, head/heart: 33s). Mean time to loss of heartbeat with the head-only method was 121s. No heartbeat was observed with the head/heart method. Longissimus thoracis pH, color, and drip loss were not different between stunning methods. This study determined that the head/heart electrical stunning method reduces the incidence of signs of return to sensibility without significant effects on meat quality, plant operation speed, or blood lactate concentration. In addition, the head/heart method requires no capital investment for plants that are currently using the head-only method.

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Changes of the activities of glycolytic and oxidative enzymes before and after slaughter in the longissimus muscle of Pietrain and Duroc pigs and a Duroc-Pietrain crossbreed

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After slaughter of pigs, the pH of the meat decreases due to lactate accumulation within the tissue. In addition to calcium homeostasis, energy metabolism plays a key role during the muscle-to-meat transition, and it is interesting to know how specific enzymes of the glycolytic and oxidative pathways change during this process, especially in relation to the antemortem situation, and if there is an impact of these alterations on the meat quality characteristics. Therefore, in the present study samples of the LM from the pig genetic groups Pietrain (Pi), Duroc (Du), and a Du × Pi crossbreed population (DuPi) were collected 24 h before as well as 1 min, 40 min, and 12 h after slaughter, and the activities of the glycogen phosphorylase (GP), phosphofructokinase (PFK), lactate dehydrogenase (LDH), citrate synthase (CS), NADH-ubiquinone oxidoreductase (complex I), and cytochrome oxidase were analyzed. Additional investigations include carcass and meat quality characteristics as well as the microstructure of the LM. The Pi breed had greater carcass yield and lean meat values, but no differences of the meat quality traits could be determined between the investigated pig breeds. The Pi pigs exhibited a greater percentage of fast-twitch glycolytic and had smaller amounts of slow-twitch-oxidative fibers in comparison with the Du pigs. The enzyme activities of the GP, PFK, and complex I increased immediately after slaughter (1 min postmortem) of the pigs and the activity of the LDH within 40 min postmortem. After 12 h, the GP, PFK, LDH, and complex I activities decreased to the amount of the preslaughter sample. No differences could be found with regard to the enzyme activities of the CS and cytochrome oxidase at all determination times. Considering the enzyme activities within the different breeds, the Pi pigs exhibited greater GP and PFK and the Du animals exhibited greater CS and complex I activities. The study indicates that the glycolytic enzymes GP, PFK, and LDH as well as the complex I influence the muscle-to-meat transition process after slaughter of the animals without an impact on the muscle quality. The activities of the GP, PFK, CS, and complex I reflect the differences of the muscle fiber composition between the Pi and Du pigs.

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Growth performance and antibiotic tolerance patterns of nursery and finishing pigs fed growth-promoting levels of antibiotics

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The objective of this study was to evaluate the impact of growth-promoting levels of antibiotics in diets for nursery and finishing pigs on growth performance and antibiotic tolerance patterns. Gilts (n=200, initial body weight was 6.2±0.003 kg), were allotted based on body weight to one of four treatments in a 2×2 factorial randomized complete block design. Nursery treatments consisted of feeding no antibiotics (CON) or an antibiotic diet (ANTI) containing chlortetracycline (CTC; 55mg/kg). At the end of the nursery phase, one-half of the pigs receiving CON were switched to a diet containing antibiotic (virginiamycin; VIR, 11 mg/kg) and one-half of the pigs receiving ANTI were switched to CON for the remainder of the trial. This created four treatments for the finishing phase, consisting of: control in nursery and finishing (CC), antibiotic in nursery, control in finishing (AC), control in nursery, antibiotic in finishing (CA), or antibiotics throughout (AT). The pigs were weighed at the diet changes during the nursery (weeks 1, 3, and 5) and finishing (weeks 7, 9, 13, 17, and 20) phases. Fecal samples were collected at all diet changes for isolation of fecal coliforms and Enterococcus and subsequently tested for tolerance to CTC and VIR. After 1 week, CON pigs weighed less (7.09 vs. 7.28 kg) and had lower ADG(149 vs. 180 g/day) and ADFI (174 vs. 192 g/day) than ANTI pigs. No performance differences were observed during the remainder of the study. At the initiation of the study (week 0), the ability of coliforms to grow in the presence of CTC and VIR, respectively, were 68 and 73% and increased to 90 and 96% at week 19 (time effect). At week 17, tolerance of coliforms to CTC was greater for CA (98%) than AC (86%, time×treatment effect, Pb0.004). Enterococcus tolerance to CTC at week 7 was lower for CC (55%) compared to AT (76%), AC (74%) and CA (83%, time×treatment effect). At week 9, Enterococcus tolerant to CTC and VIR, respectively, was lower for CC (15 and 18%) than AT (31 and 40%), AC (35 and 35%), and CA (44 and 43%, time×treatment effect). Antibiotic growth promoters had little impact on growth performance in clean, isolated facilities with high labor inputs. The tolerance of bacteria to antibiotics fluctuated over time and persisted regardless of the use of antibiotic growth promoters.

Effect of pen mates on growth, backfat depth, and longissimus muscle area of swine

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Records on final BW (kg), backfat depth (cm), and LM area (cm2) of pigs from a University of Nebraska Large White/Landrace composite population were analyzed to estimate the effects of pen mates. Measurements were at approximately 180 d of age for 3,524 pigs in 351 pens (9 to 11 pigs per pen) farrowed from 1999 to 2005. The area of each pen was 8.13 m2. The full model (M1) included the fixed effects of contemporary group, sex, line, and the covariates of age and inbreeding coefficient, and included random direct genetic, genetic pen-mate, permanent environmental, pen, litter, and residual effects. A derivativefree algorithm was used to obtain REML estimates of variance components for final BW adjusted to 180 d of age with M1 and 7 reduced models, and with 4 reduced models for the carcass traits. For final BW, likelihood ratio tests showed that M1 did not fit the data better than model 2 (permanent environmental effect omitted from M1) or model 3 (pen omitted from M1). Model 2 was not significantly (P > 0.05) better than model 3, which shows that variance attributable to pen effects and permanent environmental effects cannot be separated. Large sampling variances of estimates of the pen component of variance for models with pen-mate effects also indicate an inability to separate pen effects from the effects of pen mates. When pen-mate genetic effects were not in the model, estimates of components of variance and the fit of the data were the same for models 4 (included both permanent environmental and pen effects), 6 (included pen effects), and 7 (included permanent environmental effects), which shows that including both pen and permanent environmental effects was no better than including one or the other. Models 4, 6, and 7 were significantly better than model 8, which did not include pen-mate effects and pen effects, implying that pen effects are important. The estimate of pen variance with model 2 was approximately (number of pen mates − 1) times the estimate of variance of pen-mate permanent environmental effects with model 3. Patterns of estimates of variance components with models 2, 5, 6, and 8 for backfat depth and LM area were similar to those for final BW. Estimates of direct genetic variance and phenotypic variance were similar for all models. Estimates of heritability for direct genetic effects were approximately 0.40 for final BW, 0.45 for backfat depth, and 0.27 for LM area. Estimates of heritability for pen-mate genetic effects were 0.001 for the 3 traits for models including either pen or permanent environmental effects. Under the management conditions for this experiment, the conclusion is that the model for genetic evaluation should include litter effects and either pen effects or pen-mate permanent environmental effects and possibly genetic pen-mate effects, in general agreement with the results of studies of different populations at other locations.

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Bayes factor analyses of heritability for serum and muscle lipid traits in Duroc pigs

Posted in: Meat Quality, Production by admin on July 29, 2011 | No Comments

Concern about pork quality has increased during last decades. Given the influence of fat content and composition on sensorial, nutritional, and technological variables of pork meat, an accurate knowledge about genetic control of pig lipid metabolism is required. This study focused on providing a broad characterization for serum and meat lipid trait heritability estimates in pigs. Analyses were performed on a population of 370 Duroc barrows and measured the additive polygenic background for the serum concentrations of cholesterol, triglyceride, and low- and high-density lipoproteins at 45 and 190 d of age (at slaughter), as well as intramuscular fat, cholesterol content, and C:12 to C:22 fatty acid content in longissimus thoracis et lumborum and gluteus medius muscles at slaughter. These traits were analyzed under Bayesian univariate animal linear models, and the statistical relevance of heritability estimates was evaluated through Bayes factor (BF); the model with polygenic additive effects was favored when BF >1. All serum lipid traits showed relevant genetic determinism, but the BF reached greater values at 190 d of age. Serum lipid traits displayed moderate modal estimates for heritability that ranged from 0.18 to 0.30. On the other hand, the genetic determinism for meat quality traits showed a heterogeneous behavior with large and less-than-1 BF. In general, longissimus thoracis et lumborum and gluteus medius muscles showed a similar pattern, with strong evidence of polygenic additive effects for intramuscular fat and palmitic, stearic, and cis-vaccenic fatty acids content, whereas oleic and muscle cholesterol content showed moderate to weak BF with moderate heritabilities. Similarly, results regarding linoleic, arachidonic, n-3, and n-6 fatty acids suggested a moderate genetic determinism, but only in gluteus medius muscle. For the remaining traits (myristic and palmitoleic fatty acids in both muscles, along with linoleic, arachidonic, n-3, and n-6 fatty acids in the longissimus thoracis et lumborum muscle), no statistical evidence for genetic control was observed in this study. As a whole, these results confirm the complexity of lipid metabolism in pigs.

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Detection of a quantitative trait locus for ham weight with polar over-dominance near the ortholog of the callipyge locus in an experimental pig F2 population

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 The distal part of SSC7, which contains the ortholog to the ovine region encompassing the callipyge locus, was analyzed in a Pietrain F2 resource population comprising more than 2,700 offspring. The aim of the study was to map QTL affecting carcass traits comparable with the callipyge phenotype in sheep. We applied an interval mapping approach using 14 microsatellite markers and detected 3 QTL with small effects. The first QTL affects fat thickness on the middle of the back, with no detectable impact on fat sizes at other places on the back, whereas the second QTL affects side fat thickness. The third QTL influences the ham weight and shows a clear parent-of-origin dependent effect in the form of maternal polar over-dominance. It is not located at the position of the imprinting cluster including the callipyge locus, but 7 cM proximal.

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Impact of piglet birth weight, birth order, and litter size on subsequent growth performance, carcass quality, muscle composition, and eating quality of pork

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The objective of this study was to investigate the relationships among birth weight, birth order, or litter size on growth performance, carcass quality, and eating quality of the ultimate pork product. Data were collected from 98 pig litters and, with the addition of recording birth weight and birth order, farrowing and piglet management were according to normal barn practices. In the nursery and during growout, the pigs received the normal feeding program for the barn and, with the addition of individual tattooing, were marketed as per standard procedure. From 24 litters, selected because they had at least 12 pigs born alive and represented a range of birth weights, 4 piglets were chosen (for a total of 96 piglets) and sent to Agriculture and Agri-Food Canada–Lacombe Research Centre when they reached 120 kg for extensive meat quality and sensory analysis. Individual BW was measured at birth, on the day of weaning, 5 wk after weaning, at nursery exit, at first pull, and at the time of marketing. Litter sizes were divided into 3 categories: small (3 to 10 piglets), medium (11 to 13 piglets), and large (14 to 19 piglets). There were 4 birth-weight quartiles: 0.80 to 1.20, 1.25 to 1.45, 1.50 to 1.70, and 1.75 to 2.50 kg. Increased litter size resulted in reduced mean birth weight, but had no effect on within litter variability or carcass quality when slaughtered at the same endpoint. Lighter birth-weight pigs had reduced BW at weaning, 5 and 7 wk postweaning, and at first pull and had increased days to market. Birth weight had limited effects on carcass quality, weight of primal cuts, objective quality, and overall palatability of the meat at the same slaughter weight. In conclusion, increased litter size resulted in decreased mean birth weight but no change in days to market. Lighter birthweight pigs took longer to reach market. Despite some differences in histological properties, birth weight had limited effects on carcass composition or final eating quality of the pork when slaughtered at the same BW and large litter size resulted in more pigs weaned and marketed compared with the smaller litters. We concluded that based on the conditions of this study, other than increased days to market, there is no reason based on pig performance or pork quality to slow down the goal of the pork industry to increase sow productivity as a means to increase efficiency.

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Results from six generations of selection for intramuscular fat in Duroc swine using real-time ultrasound. I. Direct and correlated phenotypic responses to selection

Posted in: Meat Quality, Production by admin on July 26, 2011 | No Comments

A study was conducted to evaluate the efficacy of selection for intramuscular fat (IMF) in a population of purebred Duroc swine using real-time ultrasound. Forty gilts were purchased from US breeders and randomly mated for 2 generations to boars available in regional boar studs, resulting in a base population of 56 litters. Littermate pairs of gilts from this population were randomly assigned to a select line (SL) or control line (CL) and mated to the same sire to establish genetic ties between lines. At an average BW of 114 kg, a minimum of 4 longitudinal ultrasound images were collected 7 cm off-midline across the 10th to 13th ribs of all pigs for the prediction of IMF (UIMF). At least 1 barrow or gilt was slaughtered from each litter, and carcass data were collected. A sample of the LM from the 10th to 11th rib interface was analyzed for carcass IMF (CIMF). Breeding values for IMF were estimated by fitting a 2-trait (UIMF and CIMF) animal model in MATVEC. In the SL, selection in each subsequent generation was based on EBV for IMF with the top 10 boars and top 75 gilts used to produce the next generation. One boar from each sire family and 50 to 60 gilts representing all sire families were randomly selected to maintain the CL. Through 6 generations of selection, an 88% improvement in IMF has been realized (4.53% in SL vs. 2.41% in CL). Results of this study revealed no significant correlated responses in measures of growth performance. However, 6 generations of selection for IMF have yielded correlated effects of decreased loin muscle area and increased backfat. Additionally, the SL obtained more desirable objective measures of tenderness and sensory evaluations of flavor and off-flavor. Meat quality characteristics of pH, water holding capacity, and percent cooking loss were not significantly affected by selection for IMF. Selection for IMF using real-time ultrasound is effective but may be associated with genetic ramifications for carcass composition traits. Intramuscular fat may be used in purebred Duroc swine breeding programs as an indicator trait for sensory traits that influence consumer acceptance; however, rapid improvement should not be expected when simultaneous improvement in other trait categories is also pursued. 

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Muscle characteristics and meat quality traits are affected by divergent selection on residual feed intake in pigs

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Residual feed intake (RFI) is defined as the difference between the observed feed intake and that expected based on requirements for maintenance and production. A divergent selection was conducted during 4 generations in Large White male pigs to produce low and high RFI lines. The present study aims at determining the influence of this selection on biochemical and histological traits of skeletal muscle, and relating these changes to correlated effects on growth, carcass composition, and meat quality traits. At 8 d preslaughter, biopsies from the LM were taken in the fed state on 14 females from each RFI line fed ad libitum. Animals were slaughtered at 107.8 +/- 8.0 kg of BW without any previous fasting. Samples of LM, semimembranosus (SM), biceps femoris (BFM), and rhomboideus muscles were taken at both 30 min and 24 h postmortem. Myofiber typing was only assessed in LM. Low RFI pigs (“efficient”) had leaner carcasses with greater muscle content, less backfat thickness, and less intramuscular fat content in all 4 muscles. Their greater muscle content was associated with hypertrophy of all fast-twitch fibers. Glycogen content in all glycolytic muscles (i.e., LM, SM and BFM), was greater in low than high RFI pigs. The greater accumulation of glycogen in LM of low RFI pigs was specifically located in the fast-twitch glycolytic IIBW fibers, which correspond to fibers containing IIb, IIb + IIx, or IIx myosin heavy chains. The difference in muscle glycogen content between RFI line pigs was more significant in the living animals than at 30 min postmortem. This was associated with a decreased ultimate pH, and greater lightness of color and drip loss in LM of low than high RFI line pigs, suggesting that selection for reduced RFI may impair some meat quality traits, such as water-holding capacity. Pigs from the low RFI line exhibited a greater percentage of IIBW fibers in LM and tended to have less lipid β-oxidative capacity in LM, SM, and BFM. In contrast, no difference between lines was found for citrate synthase and lactate dehydrogenase activities, mitochondrial activity, and expression of genes coding for uncoupling proteins 2 and 3. Differences between RFI pigs in plasma leptin, cortisol, and thyroid hormone concentrations are presented and discussed. In conclusion, selection for low RFI influenced muscle properties in a way favoring muscle mass, but likely impairing meat quality. 

For more information the full article can be found at http://jas.fass.org/